MRIQC: individual T1w report

Summary

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv0.24707546800162622
cnr4.682208750641958
efc0.5851691426357011
fber86.4695816040039
fwhmavg3.7973466666666664
fwhmx3.69474
fwhmy4.06071
fwhmz3.63659
icvscsf0.16446583531309533
icvsgm0.5076822577196071
icvswm0.32785190696729755
inumed1.042364478111267
inurange0.29812659621238713
qi10.0
qi20.0008721584903432397
rpvecsf30.34850447724069
rpvegm11.799238951408102
rpvewm19.85615223105119
sizex180
sizey256
sizez256
snrcsf1.9542993156000958
snrgm10.49674344995607
snrtotal8.800481792876452
snrwm13.950402613073193
snrdcsf10.727386893626438
snrdgm27.876896531044373
snrdtotal29.07956901124307
snrdwm48.6344236090584
spacingx1.0
spacingy1.0
spacingz1.0
summarybgk0.5370185563990022
summarybgmad13.470746994018555
summarybgmean50.44243240356445
summarybgmedian49.41492462158203
summarybgn2676277.0
summarybgp0530.236375045776366
summarybgp9574.41383056640625
summarybgstdv13.750226020812988
summarycsfk0.1790545457401138
summarycsfmad113.97550964355469
summarycsfmean247.85594177246094
summarycsfmedian220.57379150390625
summarycsfn7168.0
summarycsfp05105.89708824157715
summarycsfp95449.95830230712886
summarycsfstdv112.85804748535156
summarygmk0.2840522277071238
summarygmmad53.13153076171875
summarygmmean575.0987548828125
summarygmmedian573.1976318359375
summarygmn53250.0
summarygmp05488.4438140869141
summarygmp95667.0439086914062
summarygmstdv54.60667419433594
summarywmk0.8760740652871073
summarywmmad52.32299041748047
summarywmmean982.8682250976562
summarywmmedian1000.0086059570312
summarywmn167871.0
summarywmp05830.2304992675781
summarywmp951070.6038818359375
summarywmstdv71.68292236328125
tpmoverlapcsf0.22307096421718597
tpmoverlapgm0.5494062304496765
tpmoverlapwm0.5514728426933289
wm2max0.6544497366250037

Metadata

AcquisitionMatrixPE256
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber0000000517353VH3
EchoTime0.003828
FlipAngle8
ImageOrientationPatientDICOM[0, 1, 0, 0, 0, -1]
ImageType['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOMROW
InstitutionNameMichigan_State_University
InversionTime0.04
MRAcquisitionType3D
MagneticFieldStrength3
ManufacturerGE
ManufacturersModelNameSigna_HDxt
ModalityMR
PatientPositionHFS
PercentPhaseFOV100
PixelBandwidth162.734
ProtocolNamemprage_1mm_iso_20.83_bw
ReconMatrixPE256
RepetitionTime0.008596
SAR0.306132
ScanOptionsNONE
ScanningSequenceRM
SequenceVariantNONE
SeriesDescriptionmprage_1mm_iso_20.83_bw
SliceThickness1
SoftwareVersions24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices1
StationNameMR03MR03

Provenance information

md5sum47fac836f9dc7805e3e50184782e97ff
softwaremriqc
version0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.