MRIQC: individual T1w report

Summary

Subject ID: 026_ExercisePre.
Date and time: 2018-05-06, 21:45.
MRIQC version: 0.10.4.
Workflow details:
- Detected a zero-filled frame, has the original image been rotated?

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv			0.24707546800162622
cnr			4.682208750641958
efc			0.5851691426357011
fber			86.4695816040039
fwhm	avg		3.7973466666666664
fwhm	x		3.69474
fwhm	y		4.06071
fwhm	z		3.63659
icvs	csf		0.16446583531309533
icvs	gm		0.5076822577196071
icvs	wm		0.32785190696729755
inu	med		1.042364478111267
inu	range		0.29812659621238713
qi	1		0.0
qi	2		0.0008721584903432397
rpve	csf		30.34850447724069
rpve	gm		11.799238951408102
rpve	wm		19.85615223105119
size	x		180
size	y		256
size	z		256
snr	csf		1.9542993156000958
snr	gm		10.49674344995607
snr	total		8.800481792876452
snr	wm		13.950402613073193
snrd	csf		10.727386893626438
snrd	gm		27.876896531044373
snrd	total		29.07956901124307
snrd	wm		48.6344236090584
spacing	x		1.0
spacing	y		1.0
spacing	z		1.0
summary	bg	k	0.5370185563990022
summary	bg	mad	13.470746994018555
summary	bg	mean	50.44243240356445
summary	bg	median	49.41492462158203
summary	bg	n	2676277.0
summary	bg	p05	30.236375045776366
summary	bg	p95	74.41383056640625
summary	bg	stdv	13.750226020812988
summary	csf	k	0.1790545457401138
summary	csf	mad	113.97550964355469
summary	csf	mean	247.85594177246094
summary	csf	median	220.57379150390625
summary	csf	n	7168.0
summary	csf	p05	105.89708824157715
summary	csf	p95	449.95830230712886
summary	csf	stdv	112.85804748535156
summary	gm	k	0.2840522277071238
summary	gm	mad	53.13153076171875
summary	gm	mean	575.0987548828125
summary	gm	median	573.1976318359375
summary	gm	n	53250.0
summary	gm	p05	488.4438140869141
summary	gm	p95	667.0439086914062
summary	gm	stdv	54.60667419433594
summary	wm	k	0.8760740652871073
summary	wm	mad	52.32299041748047
summary	wm	mean	982.8682250976562
summary	wm	median	1000.0086059570312
summary	wm	n	167871.0
summary	wm	p05	830.2304992675781
summary	wm	p95	1070.6038818359375
summary	wm	stdv	71.68292236328125
tpm	overlap	csf	0.22307096421718597
tpm	overlap	gm	0.5494062304496765
tpm	overlap	wm	0.5514728426933289
wm2max			0.6544497366250037

Metadata

AcquisitionMatrixPE	256
ConversionSoftware	dcm2niix
ConversionSoftwareVersion	v1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber	0000000517353VH3
EchoTime	0.003828
FlipAngle	8
ImageOrientationPatientDICOM	[0, 1, 0, 0, 0, -1]
ImageType	['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOM	ROW
InstitutionName	Michigan_State_University
InversionTime	0.04
MRAcquisitionType	3D
MagneticFieldStrength	3
Manufacturer	GE
ManufacturersModelName	Signa_HDxt
Modality	MR
PatientPosition	HFS
PercentPhaseFOV	100
PixelBandwidth	162.734
ProtocolName	mprage_1mm_iso_20.83_bw
ReconMatrixPE	256
RepetitionTime	0.008596
SAR	0.306132
ScanOptions	NONE
ScanningSequence	RM
SequenceVariant	NONE
SeriesDescription	mprage_1mm_iso_20.83_bw
SliceThickness	1
SoftwareVersions	24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices	1
StationName	MR03MR03

Provenance information

md5sum	47fac836f9dc7805e3e50184782e97ff
software	mriqc
version	0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.